ReportInfectionDuration

The infection duration report (ReportInfectionDuration.csv) records one row each time an infection clears in an individual, capturing the identity and age of the individual, the node, and the total duration of that infection in days. Because the report writes a row for every InfectionCleared event, you may want to use Start_Day and End_Day to limit the output to the time window of interest.

Configuration

To generate this report, configure the following parameters in the custom_reports.json file:

Parameter	Data type	Min	Max	Default	Description
Start_Day	float	0	3.40E+38	0	The day of the simulation to start collecting data.
End_Day	float	0	3.40E+38	3.40E+38	The day of the simulation to stop collecting data.

{
    "Reports": [
        {
            "class": "ReportInfectionDuration",
            "Start_Day": 3855,
            "End_Day": 4000
        }
    ],
    "Use_Defaults": 1
}

Output file data

The output file is named ReportInfectionDuration.csv. The report contains the following columns.

Column	Data type	Description
Time	float	The simulation time in days when the infection was cleared.
NodeID	integer	The external ID of the node where the individual resides.
IndividualID	integer	The unique ID of the individual whose infection cleared.
Gender	enum	The gender of the individual. Possible values are M or F.
AgeYears	float	The age of the individual in years at the time the infection cleared.
InfectionDuration	float	The duration in days of the infection that cleared.

Example

The following is an example of ReportInfectionDuration.csv.

Time	NodeID	IndividualID	Gender	AgeYears	InfectionDuration
3855	340461476	27	M	10.5644	87.75
3855	340461476	29	F	10.5644	56.375
3855	340461476	40	F	10.5644	108.875
3855	340461476	107	M	10.5178	68
3855	340461476	240	F	9.09041	85.875
3855	340461476	360	M	7.73425	64.75
3855	340461476	373	F	7.67397	57.125
3855	340461476	376	M	7.6411	170.625
3855	340461476	424	F	7.15342	151.375
3855	340461476	501	F	6.43562	109.625