node_intervention
AnimalFeedKill
Bases: NodeIntervention
The AnimalFeedKill intervention class imposes node-targeted mortality to a vector that feeds on animals.
- Distributed to: Nodes
- Serialized: No. Must be redistributed when starting from a serialized file.
- Uses insecticides: Yes. Can be used to target sub-groups using genomes.
- Time-based expiration: No
- Purge existing: Adding a new intervention of this class
overwrites any existing intervention of the same class with the
same
Intervention_Name. IfIntervention_Namediffers, both coexist and their efficacies combine as 1-(1-prob1)*(1-prob2) etc. - Vector killing contributes to: Die Before Attempting to Feed
- Vector effects: Killing
- Vector sexes affected: Females seeking non-human blood meals only
- Vector life stage affected: Adult
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
campaign
|
(campaign, required)
|
An instance of the emod_api.campaign module. |
required |
killing_config
|
(AbstractWaningConfig, required)
|
The configuration of killing efficacy for vectors that feed on animals. This applies to female vectors seeking non-human blood meals. Portion of vectors seeking non-human blood meals is determined by the "Anthropophily" parameter in the species configuration. Available types are defined in Waning Effects. |
required |
insecticide_name
|
str
|
The name of the insecticide used. Only relevant when modeling insecticide resistance
via the vector genetics system. The name must match an insecticide defined via
|
None
|
common_intervention_parameters
|
CommonInterventionParameters
|
Default value: None |
None
|
Source code in emodpy_malaria/campaign/node_intervention.py
ArtificialDiet
Bases: NodeIntervention
The ArtificialDiet intervention class is used to include feeding stations for vectors within a node in a simulation. This is a node-targeted intervention and takes effect at the broad village level rather than at the individual level. For individual-level effects, use HumanHostSeekingTrap instead. An artificial diet diverts some of the vectors seeking to blood feed that day, resulting in a two-fold benefit: uninfected mosquitoes avoid biting infected humans some of the time, decreasing human-to-vector transmission, and infectious vectors are diverted to feed on the artificial diet instead of humans, decreasing vector-to-human transmission.
- Distributed to: Nodes
- Serialized: No. Must be redistributed when starting from a serialized file.
- Uses insecticides: No
- Time-based expiration: No
- Purge existing: Adding a new intervention of this class
overwrites any existing intervention of the same class with the
same
Intervention_Name. IfIntervention_Namediffers, both coexist and their efficacies combine as 1-(1-prob1)*(1-prob2) etc. - Vector killing contributes to: No killing
- Vector effects: Artificial Diet Feed instead of Human or Animal Feed
- Vector sexes affected: Meal-seeking females only
- Vector life stage affected: Adult
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
campaign
|
(campaign, required)
|
An instance of the emod_api.campaign module. |
required |
artificial_diet_target
|
(Union[ArtificialDietTarget, str], required)
|
The targeted deployment of the artificial diet. Use the ArtificialDietTarget enum values:
|
required |
attraction_config
|
(AbstractWaningConfig, required)
|
The configuration for the fraction of blood-meal-seeking vectors attracted to the artificial diet and its waning over time. Attracted vectors feed on the diet instead of on humans or animals, reducing both human-to-vector and vector-to-human transmission. Available types are defined in Waning Effects. |
required |
insecticide_name
|
str
|
The name of the insecticide used. Only relevant when modeling insecticide resistance
via the vector genetics system. The name must match an insecticide defined via
|
None
|
common_intervention_parameters
|
CommonInterventionParameters
|
Default value: None |
None
|
Source code in emodpy_malaria/campaign/node_intervention.py
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IndoorSpaceSpraying
Bases: NodeIntervention
The IndoorSpaceSpraying intervention class is a node-level vector
control mechanism that works by spraying insecticides indoors. This
class is similar to IRSHousingModification which is an individual-level intervention
that uses both repelling and killing effects while IndoorSpaceSpraying is a node-level
intervention that uses only a killing effect. Do not use these two interventions together. If
used with IRSHousingModification, the IndoorSpaceSpraying
will override IRSHousingModification's killing effect. IndoorSpaceSpraying is recommended
for use with migrating population since the individual-level interventions are attached to people
and "migrate" with them. This intervention is tied to the node and will affect anyone in the node
at currently.
- Distributed to: Nodes
- Serialized: No. Must be redistributed when starting from a serialized file.
- Uses insecticides: Yes. Can target subgroups using genomes, especially when targeting certain species.
- Time-based expiration: No
- Purge existing: Adding a new intervention of this class
overwrites any existing intervention of the same class with the
same
Intervention_Name. IfIntervention_Namediffers, both coexist and their efficacies combine as 1-(1-prob1)*(1-prob2) etc. - Vector killing contributes to: Indoor Die After Feeding, Indoor Die Before Feeding (when combined with HumanHostSeekingTrap)
- Vector effects: Killing
- Vector sexes affected: Indoor meal-seeking females only
- Vector life stage affected: Adult
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
campaign
|
(campaign, required)
|
An instance of the emod_api.campaign module. |
required |
killing_config
|
(AbstractWaningConfig, required)
|
The configuration of killing efficacy and waning for the indoor spray. This effect applies to indoor meal-seeking female mosquitoes that encounter the sprayed surfaces. Do not use this intervention together with IRSHousingModification, as it will override the killing effect. Available types are defined in Waning Effects. |
required |
spray_coverage
|
float
|
The proportion of the node that has been sprayed. This value is multiplied by the current efficacy of the waning effect to determine the final kill rate. Range: 0.0 to 1.0. Default value: 1.0 |
1.0
|
insecticide_name
|
str
|
The name of the insecticide used. Only relevant when modeling insecticide resistance
via the vector genetics system. The name must match an insecticide defined via
|
None
|
common_intervention_parameters
|
CommonInterventionParameters
|
The CommonInterventionParameters object that contains the 5 common parameters. Default value: None |
None
|
Source code in emodpy_malaria/campaign/node_intervention.py
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InputEIR
Bases: NodeIntervention
The InputEIR intervention class enables the Entomological Inoculation Rate (EIR) to be configured either for each month or for each day of the year in a particular node. The EIR is the number of infectious mosquito bites received in a night, usually calculated by taking the number of mosquito bites received per night and multiplying by the proportion of those bites that are positive for sporozoites.
Whether each individual actually becomes infected from the
challenge is modified by individual-level factors. Each person's
probability of infection is scaled by a combined relative risk
that accounts for:
- Acquisition immunity -- both naturally acquired immunity
that develops over time through repeated exposure and any
reduction from acquisition-blocking vaccines (e.g.,
SimpleVaccine
with
vaccine_type=VaccineType.ACQUISITION_BLOCKING). - Age-dependent biting risk -- if
config.parameters.Age_Dependent_Biting_Risk_Typeis set toAgeDependentBitingRiskType.LINEARorAgeDependentBitingRiskType.SURFACE_AREA_DEPENDENT, younger (smaller) individuals receive proportionally fewer bites. - Demographics-based risk -- if individuals have unique biting risk set via MalariaDemographics.set_risk_distribution(), each individual's personal risk factor further scales their exposure.
Vector control interventions will not affect the EIR delivered by
this intervention. If vectors are included when this class is used,
the specified EIR is added on top of the EIR provided by vectors.
When distributing InputEIR to a node that already has an
existing InputEIR intervention, the existing intervention will
be purged and replaced with the new one.
- Distributed to: Nodes
- Serialized: No. Must be redistributed when starting from a serialized file.
- Uses insecticides: Does not apply
- Time-based expiration: No
- Purge existing: Yes. Adding a new intervention of this class will overwrite an existing intervention of the same class.
- Vector killing contributes to: Does not apply
- Vector effects: Does not apply
- Vector sexes affected: Does not apply
- Vector life stage affected: Does not apply
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
campaign
|
(campaign, required)
|
An instance of the emod_api.campaign module. |
required |
monthly_eir
|
list[float]
|
An array of exactly 12 values where each value is the mean
number of infectious bites experienced by an individual for
that month. Each value must be between 0 and 1000. The
"current month" is based on time since the intervention was
distributed, creating a 12-month repeating pattern from the
distribution day. Exactly one of |
None
|
daily_eir
|
list[float]
|
An array of exactly 365 values where each value is the mean
number of infectious bites experienced by an individual for
that day of the year. Each value must be between 0 and 1000.
Exactly one of |
None
|
scaling_factor
|
float
|
A modifier that is multiplied by the EIR determined for the current day. Can be used to uniformly scale all EIR values up or down without modifying the input array. Must be between 0 and 10,000. Default value: 1.0 |
1.0
|
common_intervention_parameters
|
CommonInterventionParameters
|
Default value: None |
None
|
Example
Apply a seasonal monthly EIR pattern::
from emodpy_malaria.campaign.node_intervention import InputEIR
eir = InputEIR(
campaign=campaign,
monthly_eir=[5, 10, 20, 30, 25, 15, 10, 8, 12, 18, 10, 5]
)
Example
Apply daily EIR with a scaling factor::
import numpy as np
from emodpy_malaria.campaign.node_intervention import InputEIR
daily_values = list(np.random.uniform(0, 2, 365))
eir = InputEIR(
campaign=campaign,
daily_eir=daily_values,
scaling_factor=0.5
)
Source code in emodpy_malaria/campaign/node_intervention.py
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LarvalHabitatMultiplierSpec
Defines a single entry in the Larval_Habitat_Multiplier array used
by ScaleLarvalHabitat.
Each entry specifies a multiplier (factor) to scale the larval
habitat capacity for a given habitat type and, optionally, a specific
mosquito species. Multiple entries can be combined in a list to target
different habitat/species combinations independently.
When habitat is set to HabitatType.ALL_HABITATS, the factor
applies to every habitat type. When species is "ALL_SPECIES"
(the default), the factor applies to all species that share that
habitat type. If both ALL_HABITATS and "ALL_SPECIES" are used,
the factor uniformly scales all larval habitat in the node.
See Larval Habitat for information on habitat type definitions and configuration.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
campaign
|
(campaign, required)
|
An instance of the emod_api.campaign module. |
required |
habitat
|
(Union[HabitatType, str], required)
|
The habitat type to which this multiplier applies. Use the HabitatType enum values:
|
required |
factor
|
(float, required)
|
The multiplier by which to scale the larval habitat availability. A value of 1.0 means no change, values less than 1.0 reduce habitat capacity, and values greater than 1.0 increase it. Range: 0 to 3.4e+38. |
required |
species
|
str
|
The name of the mosquito species to which this multiplier
applies. Must match one of the species names defined in
Vector_Species_Params in the configuration, or
|
'ALL_SPECIES'
|
Example
Reduce all habitat by half for all species::
from emodpy_malaria.campaign.node_intervention import LarvalHabitatMultiplierSpec
from emodpy_malaria.utils.emod_enum import HabitatType
spec = LarvalHabitatMultiplierSpec(
campaign=campaign,
habitat=HabitatType.ALL_HABITATS,
factor=0.5
)
Example
Double temporary rainfall habitat for a specific species::
spec = LarvalHabitatMultiplierSpec(
campaign=campaign,
habitat=HabitatType.TEMPORARY_RAINFALL,
factor=2.0,
species="arabiensis"
)
Source code in emodpy_malaria/campaign/node_intervention.py
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LarvalMicrosporidiaIntervention
Bases: NodeIntervention
The LarvalMicrosporidiaIntervention is a node-level intervention
that mimics seeding water bodies with microsporidia or other
endosymbiont to infect mosquito larvae, reducing their ability to
transmit malaria. The intervention distributes a specific
microsporidia strain and can be limited to a particular larval
habitat type. When no other LarvalMicrosporidiaIntervention
instances are present, the portion of larvae infected each day is
the product of the current infectivity config value and habitat
coverage. The infectivity waning effect can be configured to decay
over time.
Multiple LarvalMicrosporidiaInterventions can target larvae in the same habitat. The algorithm resolves these into a single map of strain to fraction newly infected: interventions are processed sequentially, each new intervention's coverage reaches into both already-claimed and unclaimed larvae, and overlapping portions are split proportionally by effect strength. Same-strain entries are merged with coverage-weighted averaging. Total coverage across all strains never exceeds 1.0.
- Distributed to: Nodes
- Serialized: No. Must be redistributed when starting from a serialized file.
- Uses insecticides: No
- Time-based expiration: No. It will continue to exist even if efficacy is zero.
- Purge existing: No. Already existing intervention(s) of this class continue to exist together with any new interventions. Their coverages and effects are resolved per the algorithm described above.
- Vector killing contributes to: Does not apply
- Vector effects: Microsporidia/endosymbiont infection of larvae
- Vector sexes affected: Both male and female larvae
- Vector life stage affected: Larval
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
campaign
|
(campaign, required)
|
An instance of the emod_api.campaign module. |
required |
strain_name
|
(str, required)
|
Name of the microsporidia strain (must match a strain defined in vector species config). |
required |
habitat_target
|
Union[HabitatType, str]
|
Target habitat type for the intervention. Use the HabitatType enum values:
Default value: HabitatType.ALL_HABITATS |
ALL_HABITATS
|
habitat_coverage
|
float
|
Fraction of targeted habitat(s) that receive the intervention. Minimum value: 0 Maximum value: 1 Default value: 1 |
1
|
infectivity_config
|
AbstractWaningConfig
|
The configuration of the daily microsporidia infectivity applied to larvae and its waning over time. This determines the probability that larvae acquire microsporidia from this intervention on each time step. The actual fraction of larvae infected is the product of this effect and habitat_coverage. Available types are defined in Waning Effects. Default value: None |
None
|
common_intervention_parameters
|
CommonInterventionParameters
|
Default value: None |
None
|
Example
Introduce microsporidia into all habitats::
from emodpy_malaria.campaign.node_intervention import LarvalMicrosporidiaIntervention
from emodpy_malaria.campaign.waning_config import Constant
from emodpy_malaria.utils.emod_enum import HabitatType
microsporidia = LarvalMicrosporidiaIntervention(
campaign=campaign,
strain_name="Strain_A",
habitat_target=HabitatType.ALL_HABITATS,
habitat_coverage=0.8,
infectivity_config=Constant(campaign, initial_effect=0.5)
)
Source code in emodpy_malaria/campaign/node_intervention.py
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Larvicides
Bases: NodeIntervention
The Larvicides intervention class is a node-level intervention that configures a killing effect for larvae in specific habitats. This intervention can be used to simulate the application of larvicides to water bodies.
- Distributed to: Nodes
- Serialized: No. Must be redistributed when starting from a serialized file.
- Uses insecticides: Yes. The vector genome can be used to target specific genders.
- Time-based expiration: No. It will continue to exist even if efficacy is zero.
- Purge existing: No. Already existing intervention(s) of this class continue to exist together with any new interventions. Their efficacies combine as 1-(1-prob1)*(1-prob2) etc.
- Vector killing contributes to: Combines with competition and rainfall to kill larvae every time step.
- Vector effects: Killing
- Vector sexes affected: Both male and female larvae
- Vector life stage affected: Larval
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
campaign
|
(campaign, required)
|
An instance of the emod_api.campaign module. |
required |
killing_config
|
(AbstractWaningConfig, required)
|
The configuration of larval killing efficacy and waning in the targeted habitat. This determines the daily probability of larvae dying due to the larvicide application. The effect combines with competition and rainfall to kill larvae every time step. Available types are defined in Waning Effects. |
required |
habitat_target
|
Union[HabitatType, str]
|
Target habitat type for the larvicide. Use the HabitatType enum values:
Default value: HabitatType.ALL_HABITATS |
ALL_HABITATS
|
insecticide_name
|
str
|
The name of the insecticide used. Only relevant when modeling insecticide resistance
via the vector genetics system. The name must match an insecticide defined via
|
None
|
common_intervention_parameters
|
CommonInterventionParameters
|
Default value: None |
None
|
Example
Apply larvicide to all habitats::
from emodpy_malaria.campaign.node_intervention import Larvicides
from emodpy_malaria.campaign.waning_config import Constant
from emodpy_malaria.utils.emod_enum import HabitatType
larvicide = Larvicides(
campaign=campaign,
killing_config=Constant(campaign, initial_effect=0.7),
habitat_target=HabitatType.ALL_HABITATS
)
Example
Target only temporary rainfall habitats::
larvicide = Larvicides(
campaign=campaign,
killing_config=Constant(campaign, initial_effect=0.9),
habitat_target=HabitatType.TEMPORARY_RAINFALL,
insecticide_name="Temephos"
)
Source code in emodpy_malaria/campaign/node_intervention.py
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MalariaChallenge
Bases: NodeIntervention
The MalariaChallenge intervention class is a node-level intervention similar to Outbreak. However, instead of distributing infections, it distributes malaria challenges by either inflicting sporozoites or infectious mosquito bites.
Whether each individual actually becomes infected from the
challenge is modified by individual-level factors. Each person's
probability of infection is scaled by a combined relative_risk
that accounts for:
- Acquisition immunity -- both naturally acquired immunity
that develops over time through repeated exposure and any
reduction from acquisition-blocking vaccines (e.g.,
SimpleVaccine
with
vaccine_type=VaccineType.ACQUISITION_BLOCKING). - Age-dependent biting risk -- if
config.parameters.Age_Dependent_Biting_Risk_Typeis set toAgeDependentBitingRiskType.LINEARorAgeDependentBitingRiskType.SURFACE_AREA_DEPENDENT, younger (smaller) individuals receive proportionally fewer bites. - Demographics-based risk -- if individuals have unique biting risk set via MalariaDemographics.set_risk_distribution(), each individual's personal risk factor further scales their exposure.
This intervention cannot be used with parasite genetics
(MALARIA_MECHANISTIC_MODEL_WITH_PARASITE_GENETICS). Use
OutbreakIndividualMalariaGenetics
instead.
- Distributed to: Nodes
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
campaign
|
(campaign, required)
|
An instance of the emod_api.campaign module. |
required |
sporozoite_count
|
int
|
Number of sporozoites per individual.
Exactly one of |
None
|
infectious_bite_count
|
int
|
Number of infectious bites per individual. Exactly one of |
None
|
coverage
|
float
|
The fraction of the population that receives the challenge. Must be between 0 and 1. Default value: 1.0 |
1.0
|
common_intervention_parameters
|
CommonInterventionParameters
|
Default value: None |
None
|
Example
Challenge 8% of the population with 5 infectious bites each; multiple bites still result in only one infection::
from emodpy_malaria.campaign.node_intervention import MalariaChallenge
from emodpy_malaria.utils.emod_enum import ChallengeType
# Challenge 8% of the population with 5 infectious bites each;
# multiple infectious bites will result in only one infection in a person.
challenge = MalariaChallenge(
campaign=campaign,
challenge_type=ChallengeType.INFECTIOUS_BITES,
infectious_bite_count=5,
coverage=0.08
)
Source code in emodpy_malaria/campaign/node_intervention.py
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MosquitoRelease
Bases: NodeIntervention
The MosquitoRelease intervention class adds mosquito release vector control programs to the simulation. Mosquito release is a key vector control mechanism that allows the release of sterile males, genetically modified mosquitoes, or even Wolbachia- or Microsporidia-infected mosquitoes. See Vector Control for related configuration parameters.
Released vectors are added to the population and participate in
the vector life cycle and mating system the same day. You can
also release already-mated females to guarantee specific genomes
in the offspring by setting the released_mate_genome parameter.
When released_mate_genome is provided, the released females
will be fully gestated and ready to lay eggs immediately.
The number of mosquitoes released can be specified as a fixed
count (released_number) or as a ratio relative to the
existing population of the same gender from the previous timestep
(released_ratio). Exactly one of these must be provided.
See Vector Genetics for information on defining vector genomes, gene drivers, and insecticide resistance alleles. See Microsporidia Infection Model for information on microsporidia strains and their transmission dynamics within vector populations.
- Distributed to: Nodes
- Expires: Immediately (one-time release)
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
campaign
|
(campaign, required)
|
An instance of the emod_api.campaign module. |
required |
released_species
|
(str, required)
|
The name of the released mosquito species, such as arabiensis. The Vector_Species_Params configuration parameter must contain this specific species. |
required |
released_genome
|
(list[list[str]], required)
|
Defines the alleles of the genome of the vectors to be
released. You must explicitly define all alleles including
the gender alleles. Wildcards ( |
required |
released_number
|
int
|
The number of mosquitoes released in the intervention.
Exactly one of |
None
|
released_ratio
|
float
|
The number of released mosquitoes as a proportion of the
mosquito population of that species from the previous timestep,
specifically considering mosquitoes of the same gender as
those being released. Exactly one of |
None
|
released_infectious
|
float
|
The fraction of released female vectors that are
infectious (carrying sporozoites). Cannot be used with
male releases. Cannot be used when Malaria_Model is
set to
|
0.0
|
released_mate_genome
|
list[list[str]]
|
Defines the alleles of the genome of the mate for
pre-mated female releases. When provided,
|
None
|
released_wolbachia
|
Union[WolbachiaType, str]
|
The Wolbachia type of released mosquitoes. Use the WolbachiaType enum values:
Default value: WolbachiaType.VECTOR_WOLBACHIA_FREE |
VECTOR_WOLBACHIA_FREE
|
released_microsporidia_strain
|
str
|
The name of the microsporidia strain for the released mosquitoes. The strain name must match a strain defined in Vector_Species_Params > Microsporidia for the species being released. An empty string or None indicates no microsporidia infection. Default value: None |
None
|
common_intervention_parameters
|
CommonInterventionParameters
|
Default value: None |
None
|
Example
Release 10,000 sterile male mosquitoes::
from emodpy_malaria.campaign.node_intervention import MosquitoRelease
release = MosquitoRelease(
campaign=campaign,
released_species="arabiensis",
released_genome=[["X", "Y"], ["a0", "a0"]],
released_number=10000
)
Example
Release pre-mated Wolbachia-infected females at a ratio::
from emodpy_malaria.campaign.node_intervention import MosquitoRelease
from emodpy_malaria.utils.emod_enum import WolbachiaType
release = MosquitoRelease(
campaign=campaign,
released_species="arabiensis",
released_genome=[["X", "X"], ["a1", "a1"]],
released_ratio=0.1,
released_mate_genome=[["X", "Y"], ["a0", "a0"]],
released_wolbachia=WolbachiaType.VECTOR_WOLBACHIA_A
)
Source code in emodpy_malaria/campaign/node_intervention.py
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MultiInsecticideIndoorSpaceSpraying
Bases: NodeIntervention
The MultiInsecticideIndoorSpaceSpraying intervention class is a node-level intervention that uses Indoor Residual Spraying (IRS) with multiple insecticides. It builds on the IndoorSpaceSpraying class by allowing for multiple insecticides, each with their own specified killing efficacy.
The effectiveness of the intervention is combined using the following equation::
Total efficacy = 1.0 - (1.0 - efficacy_1)
* (1.0 - efficacy_2)
* ... * (1.0 - efficacy_n)
- Distributed to: Nodes
- Serialized: No. Must be redistributed when starting from a serialized file.
- Uses insecticides: Yes. Can target subgroups using genomes, especially when targeting certain species.
- Time-based expiration: No
- Purge existing: Adding a new intervention of this class
overwrites any existing intervention of the same class with the
same
Intervention_Name. IfIntervention_Namediffers, both coexist and their efficacies combine as 1-(1-prob1)*(1-prob2) etc. - Vector killing contributes to: Indoor Die After Feeding
- Vector effects: Killing
- Vector sexes affected: Females only
- Vector life stage affected: Adult
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
campaign
|
(campaign, required)
|
An instance of the emod_api.campaign module. |
required |
insecticides
|
(list[InsecticideWaningEffect], required)
|
A list of
InsecticideWaningEffect
objects with killing config only (variant |
required |
spray_coverage
|
float
|
The proportion of the node that has been sprayed. This value is multiplied by the current efficacy of the waning effect to determine the final kill rate. Range: 0.0 to 1.0. Default value: 1.0 |
1.0
|
common_intervention_parameters
|
CommonInterventionParameters
|
Default value: None |
None
|
Source code in emodpy_malaria/campaign/node_intervention.py
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MultiInsecticideSpaceSpraying
Bases: NodeIntervention
The MultiInsecticideSpaceSpraying intervention class is a node-level intervention that models the application of a multi-insecticide outdoor spray. As a spray, this kills male and female adult and immature mosquitoes. Mosquitoes have a daily probability of dying; feeding status does not impact the probability of death for adult female mosquitoes.
The effectiveness of the intervention is combined using the following equation::
Total efficacy = 1.0 - (1.0 - efficacy_1)
* (1.0 - efficacy_2)
* ... * (1.0 - efficacy_n)
- Distributed to: Nodes
- Serialized: No. Must be redistributed when starting from a serialized file.
- Uses insecticides: Yes. Can target subgroups using genomes, especially when targeting certain species.
- Time-based expiration: No
- Purge existing: Adding a new intervention of this class
overwrites any existing intervention of the same class with the
same
Intervention_Name. IfIntervention_Namediffers, both coexist and their efficacies combine as 1-(1-prob1)*(1-prob2) etc. - Vector killing contributes to: Die Without Attempting to Feed and Die Before Attempting Human Feed
- Vector effects: Killing
- Vector sexes affected: Both males and females
- Vector life stage affected: Adult and immature
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
campaign
|
(campaign, required)
|
An instance of the emod_api.campaign module. |
required |
insecticides
|
(list[InsecticideWaningEffect], required)
|
A list of
InsecticideWaningEffect
objects with killing config only (variant |
required |
spray_coverage
|
float
|
The proportion of the node that has been sprayed. This value is multiplied by the current efficacy of the waning effect to determine the final kill rate. Range: 0.0 to 1.0. Default value: 1.0 |
1.0
|
common_intervention_parameters
|
CommonInterventionParameters
|
Default value: None |
None
|
Source code in emodpy_malaria/campaign/node_intervention.py
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OutdoorNodeEmanator
Bases: NodeIntervention
The OutdoorNodeEmanator intervention class implements node-level outdoor emanators against blood meal-seeking vectors. This imitates the use of outdoor insecticide sprays. These interventions release insecticides into the air to repel or kill mosquitoes within the node. The intervention is distributed to nodes and affects all the meal-seeking vectors in the node.
Female vectors seeking a blood meal are repelled at
final_repelling = coverage * repelling_rate and killed at
final_killing = coverage * killing_rate. Vectors that are
neither repelled nor killed continue to seek a meal indoors or
outdoors (human and non-human) and are subject to other
interventions. After successfully feeding, vectors are subjected
again to the killing effect of the emanator as they exit indoors
or remain outdoors after the meal. The intervention contributes to
"survive without successful feed", "die before attempt human feed",
and "die after feeding" statistics.
If there are multiple OutdoorNodeEmanator instances in the
node, their efficacies combine as
1 - (1 - final_eff) * (1 - new_coverage * new_eff).
The emanator also affects the entire male population of the node
at every time step, applying only the killing effect.
- Distributed to: Nodes
- Serialized: No. Must be redistributed when starting from a serialized file.
- Uses insecticides: Yes. Can target subgroups using genomes.
- Time-based expiration: No
- Purge existing: Adding a new intervention of this class
overwrites any existing intervention of the same class with the
same
Intervention_Name. IfIntervention_Namediffers, both coexist and their efficacies combine as 1-(1-prob1)*(1-prob2) etc. - Vector killing contributes to: Survive Without Successful Feed, Die Before Attempt Human Feed, Die After Feeding, male vector daily mortality
- Vector effects: Repelling, killing
- Vector sexes affected: Females seeking blood meal and all males
- Vector life stage affected: Adult
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
campaign
|
(campaign, required)
|
An instance of the emod_api.campaign module. |
required |
repelling_config
|
(AbstractWaningConfig, required)
|
The configuration of repelling efficacy and waning for the outdoor emanator. This effect is applied first. An outdoor-meal seeking vector is repelled before any killing can occur. Repelled female vectors survive but do not attempt to feed again until the next day and are not subjected to the killing effect. This does not affect male vectors. Available types are defined in Waning Effects. |
required |
killing_config
|
(AbstractWaningConfig, required)
|
The configuration of killing efficacy and waning for the outdoor emanator. The killing effect applies to outdoor meal-seeking female vectors that were not repelled, and is applied again after vectors exit post-feeding. Males are subjected to the killing effect daily. Available types are defined in Waning Effects. |
required |
insecticide_name
|
str
|
The name of the insecticide used. Only relevant when modeling insecticide resistance
via the vector genetics system. The name must match an insecticide defined via
|
None
|
common_intervention_parameters
|
CommonInterventionParameters
|
Default value: None |
None
|
Source code in emodpy_malaria/campaign/node_intervention.py
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OutdoorRestKill
Bases: NodeIntervention
The OutdoorRestKill intervention class imposes node-targeted mortality to a vector that is at rest in an outdoor environment after a feed. This affects female vectors that have fed indoors and outdoors as well as males.
- Distributed to: Nodes
- Serialized: No. Must be redistributed when starting from a serialized file.
- Uses insecticides: Yes. Can target sub-groups using genomes or specific sexes.
- Time-based expiration: No. It will continue to exist even if efficacy is zero.
- Purge existing: Adding a new intervention of this class
overwrites any existing intervention of the same class with the
same
Intervention_Name. IfIntervention_Namediffers, both coexist and their efficacies combine as 1-(1-prob1)*(1-prob2) etc. - Vector killing contributes to: Outdoor Die After Feeding. Note that it is a node-level intervention but does not impact the other node-level probabilities.
- Vector effects: Killing
- Vector sexes affected: Males and meal-seeking females
- Vector life stage affected: Adults
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
campaign
|
(campaign, required)
|
An instance of the emod_api.campaign module. |
required |
killing_config
|
(AbstractWaningConfig, required)
|
The configuration of killing efficacy for vectors resting outdoors after feeding. This applies to female vectors that have fed both indoors and outdoors. This also applied to male vectors every time step. Available types are defined in Waning Effects. |
required |
insecticide_name
|
str
|
The name of the insecticide used. Only relevant when modeling insecticide resistance
via the vector genetics system. The name must match an insecticide defined via
|
None
|
common_intervention_parameters
|
CommonInterventionParameters
|
Default value: None |
None
|
Source code in emodpy_malaria/campaign/node_intervention.py
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OvipositionTrap
Bases: NodeIntervention
The OvipositionTrap intervention class utilizes an oviposition
trap to collect host-seeking mosquitoes, based upon imposing a
mortality to egg hatching from oviposition. This is a node-targeted
intervention and affects all mosquitoes living and feeding at a
given node. This trap requires the use of individual mosquitoes in
the simulation configuration file (Vector_Sampling_Type must be
set to TRACK_ALL_VECTORS or SAMPLE_IND_VECTORS), rather
than the cohort model.
The trap calculates a habitat-weighted average based on the current capacity of the habitat and uses this average to determine if the vector dies while laying eggs. A vector only lays eggs on the day she feeds. In the individual model, each vector has its own timer indicating when it should feed, and this duration can be temperature-dependent.
- Distributed to: Nodes
- Serialized: No. Must be redistributed when starting from a serialized file.
- Uses insecticides: No
- Time-based expiration: No. It will continue to exist even if the efficacy is zero.
- Purge existing: Adding a new intervention of this class
overwrites any existing intervention of the same class with the
same
Intervention_Name. IfIntervention_Namediffers, both coexist and their efficacies combine as 1-(1-prob1)*(1-prob2) etc. - Vector killing contributes to: Die Laying Eggs
- Vector effects: Killing
- Vector sexes affected: Recently-fed females only
- Vector life stage affected: Adult
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
campaign
|
(campaign, required)
|
An instance of the emod_api.campaign module. |
required |
killing_config
|
(AbstractWaningConfig, required)
|
The configuration of the killing effects for the fraction of oviposition cycles that end in the female mosquito's death. If there is skip oviposition, this does not configure the mortality per skip, but instead configures the effective net mortality per gonotrophic cycle over all skips. The trap calculates a habitat-weighted average based on the current capacity of the habitat. Available types are defined in Waning Effects. |
required |
habitat_target
|
Union[HabitatType, str]
|
Target habitat type for the trap. Use the HabitatType enum values:
Default value: HabitatType.ALL_HABITATS |
ALL_HABITATS
|
insecticide_name
|
str
|
The name of the insecticide used. Only relevant when modeling insecticide resistance
via the vector genetics system. The name must match an insecticide defined via
|
None
|
common_intervention_parameters
|
CommonInterventionParameters
|
Default value: None |
None
|
Example
Place oviposition traps targeting all habitats::
from emodpy_malaria.campaign.node_intervention import OvipositionTrap
from emodpy_malaria.campaign.waning_config import Constant
from emodpy_malaria.utils.emod_enum import HabitatType
trap = OvipositionTrap(
campaign=campaign,
killing_config=Constant(campaign, initial_effect=0.8),
habitat_target=HabitatType.ALL_HABITATS
)
Source code in emodpy_malaria/campaign/node_intervention.py
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ScaleLarvalHabitat
Bases: NodeIntervention
The ScaleLarvalHabitat intervention class is a node-level intervention that enables species-specific habitat modification within shared habitat types. Habitat availability can be modified at any time or at any location during the simulation, as specified in the campaign event.
The value by which to scale the larval habitat availability (specified in Habitats in the configuration file) can be set per intervention, across all habitat types, for specific habitat types, or for specific mosquito species within each habitat type. See Larval Habitat for more information on larval habitat configuration.
To reset the multiplier, you must either replace the existing one
with a new intervention with the same Intervention_Name where
the multiplier/factor is 1.0 or use Disqualifying_Properties
to cause the intervention to abort.
- Distributed to: Nodes
- Serialized: No. Must be redistributed when starting from a serialized file.
- Uses insecticides: No
- Time-based expiration: No. It will continue to exist even if the efficacy is zero.
- Purge existing: Adding a new intervention of this class
overwrites any existing intervention of the same class with the
same
Intervention_Name. IfIntervention_Namediffers, both coexist and their efficacies combine as 1-(1-prob1)*(1-prob2) etc. - Vector killing contributes to: Does not apply
- Vector effects: Does not apply
- Vector sexes affected: Both
- Vector life stage affected: Eggs and larvae, depending on oviposition settings
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
campaign
|
(campaign, required)
|
An instance of the emod_api.campaign module. |
required |
larval_habitat_multiplier
|
(list[LarvalHabitatMultiplierSpec], required)
|
A list of LarvalHabitatMultiplierSpec objects, each specifying a habitat type, a scaling factor, and optionally a target species. Multiple entries can be used to apply different multipliers to different habitat/species combinations. |
required |
common_intervention_parameters
|
CommonInterventionParameters
|
Default value: None |
None
|
Example
Reduce all habitats by half for all species::
from emodpy_malaria.campaign.node_intervention import (
ScaleLarvalHabitat, LarvalHabitatMultiplierSpec)
from emodpy_malaria.utils.emod_enum import HabitatType
slh = ScaleLarvalHabitat(
campaign=campaign,
larval_habitat_multiplier=[
LarvalHabitatMultiplierSpec(
campaign=campaign,
habitat=HabitatType.ALL_HABITATS,
factor=0.5
)
]
)
Example
Apply different multipliers per habitat type and species::
slh = ScaleLarvalHabitat(
campaign=campaign,
larval_habitat_multiplier=[
LarvalHabitatMultiplierSpec(
campaign=campaign,
habitat=HabitatType.TEMPORARY_RAINFALL,
factor=2.0,
species="arabiensis"
),
LarvalHabitatMultiplierSpec(
campaign=campaign,
habitat=HabitatType.CONSTANT,
factor=0.1,
species="funestus"
)
]
)
Source code in emodpy_malaria/campaign/node_intervention.py
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SpaceSpraying
Bases: NodeIntervention
The SpaceSpraying intervention class implements node-level vector control by spraying pesticides outdoors. This intervention targets specific habitat types, and kills all mosquitoes found in that habitat (female, male, and immature), with probability of death being the combined current efficacy, coverage, and insecticide resistance effects if any.
- Distributed to: Nodes
- Serialized: No. Must be redistributed when starting from a serialized file.
- Uses insecticides: Yes. Can target sub-groups using genomes, by setting up insecticide resistances.
- Time-based expiration: No
- Purge existing: Adding a new intervention of this class
overwrites any existing intervention of the same class with the
same
Intervention_Name. IfIntervention_Namediffers, both coexist and their efficacies combine as 1-(1-prob1)*(1-prob2) etc. - Vector killing contributes to: Die Without Attempting To Feed and Die Before Attempting Human Feed
- Vector effects: Killing
- Vector sexes affected: Males and females
- Vector life stage affected: Adult and immature
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
campaign
|
(campaign, required)
|
An instance of the emod_api.campaign module. |
required |
killing_config
|
(AbstractWaningConfig, required)
|
The configuration of killing efficacy and waning for the outdoor spray. All targeted mosquitoes (male, female, adult, and immature) have a daily probability of dying based on this effect. The killing probability is multiplied by Spray_Coverage to determine the final kill rate. Available types are defined in Waning Effects. |
required |
spray_coverage
|
float
|
The proportion of the node that has been sprayed. This value is multiplied by the current efficacy of the waning effect to determine the final kill rate. Range: 0.0 to 1.0. Default value: 1.0 |
1.0
|
insecticide_name
|
str
|
The name of the insecticide used. Only relevant when modeling insecticide resistance
via the vector genetics system. The name must match an insecticide defined via
|
None
|
common_intervention_parameters
|
CommonInterventionParameters
|
The CommonInterventionParameters object that contains the 5 common parameters. Default value: None |
None
|
Source code in emodpy_malaria/campaign/node_intervention.py
SpatialRepellent
Bases: NodeIntervention
The SpatialRepellent intervention class implements node-level spatial repellents exclusively against vectors looking to feed that day. Meal-seeking vectors affected by this intervention stop attempting to feed that day and do not interact with any other interventions affecting meal-seeking females. This reduces the number of bites on humans that day but does not affect the mosquito population.
- Distributed to: Nodes
- Serialized: No. Must be redistributed when starting from a serialized file.
- Uses insecticides: Yes. Can target subgroups using genomes.
- Time-based expiration: No
- Purge existing: Adding a new intervention of this class
overwrites any existing intervention of the same class with the
same
Intervention_Name. IfIntervention_Namediffers, both coexist and their efficacies combine as 1-(1-prob1)*(1-prob2) etc. - Vector killing contributes to: No killing, but Survive Without Successful Feed
- Vector effects: Repelling
- Vector sexes affected: Females only
- Vector life stage affected: Adult
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
campaign
|
(campaign, required)
|
An instance of the emod_api.campaign module. |
required |
repelling_config
|
(AbstractWaningConfig, required)
|
The configuration of repelling efficacy and waning for the spatial repellent. This repels female vectors that are looking to feed that day, preventing them from attempting to blood feed. Repelled vectors survive and do not attempt to feed again until the following day. Available types are defined in Waning Effects. |
required |
insecticide_name
|
str
|
The name of the insecticide used. Only relevant when modeling insecticide resistance
via the vector genetics system. The name must match an insecticide defined via
|
None
|
common_intervention_parameters
|
CommonInterventionParameters
|
Default value: None |
None
|
Source code in emodpy_malaria/campaign/node_intervention.py
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SugarTrap
Bases: NodeIntervention
The SugarTrap intervention class implements a vector
sugar-baited trap to collect and kill sugar-feeding mosquitoes,
sometimes called an attractive toxic sugar bait (ATSB). This
intervention affects all mosquitoes living and feeding at a given
node. Male vectors always sugar-feed daily and female vectors sugar-feed
as defined by Vector_Sugar_Feeding_Frequency parameter. If
this parameter for the species is set to VECTOR_SUGAR_FEEDING_NONE,
this intervention will have no effect on females.
If all species have no sugar feeding, this will raise an error.
- Distributed to: Nodes
- Serialized: No. Must be redistributed when starting from a serialized file.
- Uses insecticides: Yes. Can target sub-groups using genomes or specific sexes.
- Time-based expiration: Yes. Expiration time can be specified using specific distributions.
- Purge existing: Adding a new intervention of this class
overwrites any existing intervention of the same class with the
same
Intervention_Name. IfIntervention_Namediffers, both coexist and their efficacies combine as 1-(1-prob1)*(1-prob2) etc. - Vector killing contributes to: Sugar Trap Killing
- Vector effects: Killing
- Vector sexes affected: Males and females
- Vector life stage affected: Adult and immature when they are emerging (if configured)
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
campaign
|
(campaign, required)
|
An instance of the emod_api.campaign module. |
required |
killing_config
|
(AbstractWaningConfig, required)
|
The configuration of killing efficacy for the sugar-baited trap. Male vectors always
sugar-feed daily and female vectors sugar-feed as defined by |
required |
expiration_period_distribution
|
BaseDistribution
|
The distribution used to determine when each instance of this
intervention expires and is removed from the node. Each
instance draws an expiration duration from this distribution
at the time of distribution. Available types from
Distributions:
|
None
|
insecticide_name
|
str
|
The name of the insecticide used. Only relevant when modeling insecticide resistance
via the vector genetics system. The name must match an insecticide defined via
|
None
|
common_intervention_parameters
|
CommonInterventionParameters
|
Default value: None |
None
|
Source code in emodpy_malaria/campaign/node_intervention.py
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